PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21724
Common NameKK1_022367
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 155aa    MW: 17070 Da    PI: 4.8206
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21724genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.11e-134100495
          NF-YB   4 qdrflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                    + ++lP a v r++k  l    +++   +skd      e +  fi ++++ a+d c++ kr+ in++d++ al +  f +++ plk+ l+++r+ +
  C.cajan_21724   4 EAEELPRAIVRRVVKDKLSrcsEDGDisVSKDGLLAFSESARIFIHYLSATANDICKESKRQIINAEDVFKALEDTEFPEFIRPLKASLEEFRKKN 99 
                    56789**********99962223444116788888999*******************************************************876 PP

          NF-YB  95 g 95 
                    +
  C.cajan_21724 100 A 100
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-324140IPR009072Histone-fold
PfamPF008084.2E-9776IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.19E-248123IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAAEAEELPR AIVRRVVKDK LSRCSEDGDI SVSKDGLLAF SESARIFIHY LSATANDICK  60
ESKRQIINAE DVFKALEDTE FPEFIRPLKA SLEEFRKKNA GKKAAGSKGK EDEARKKRKL  120
EGESPGKGEG SNKGEDADKD ECSDKGEGGD DQMDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195117RKKNAGKKAAGSKGKEDEARKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434521e-115BT143452.1 Lotus japonicus clone JCVI-FLLj-16I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214165.11e-106DNA polymerase epsilon subunit 3
TrEMBLA0A151TP101e-105A0A151TP10_CAJCA; DNA polymerase epsilon subunit 3
STRINGGLYMA11G18960.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-41nuclear factor Y, subunit B11