PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21851
Common NameKK1_022501
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 197aa    MW: 22833 Da    PI: 8.8667
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21851genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.7e-3711108198
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    aCaaCk++r+kC+++C+lapyfp++++++f +vhk+FG+sn++kl+k+++ee+r+++++sl++eA++r+rdP++G +g ++k+ ++++++  el++
  C.cajan_21851  11 ACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKR 106
                    7****************************************************************************************9999987 PP

         DUF260  97 lk 98 
                     +
  C.cajan_21851 107 FR 108
                    65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.40610111IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3511106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQRNNTGMHA ACAACKHQRK KCSENCILAP YFPSNRSREF HAVHKVFGVS NITKLVKNAK  60
EEDRRRVVDS LIWEACCRQR DPIHGPYGEY TKVYNEYKKV LDELKRFRGQ NQLLQFPPLG  120
LKSVQDLIAC KGEHKAEVDN IALDNYLHGK KNGIIHDSDI YNTYCSNYLQ EFQNMRAEVV  180
IPFQQHSQPY YIAGINL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2141164114LOB family transfactor Ramosa2.1
5ly0_B4e-2141164114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21851
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-129AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215386.21e-146LOB domain-containing protein 24
TrEMBLA0A151TP841e-147A0A151TP84_CAJCA; LOB domain-containing protein 2
STRINGGLYMA12G14101.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-39LOB domain-containing protein 2