PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_21957

Common Name

KK1_022609

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 243aa MW: 28478.3 Da PI: 10.3226

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_21957	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.3e-17	23	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed lv++vk++G + W+ Iar ++ gR +kqc++rw+++l C.cajan_21957 23 KGQWSADEDRVLVQLVKRFGLKKWSQIARLLN-GRIGKQCRERWHNHL 69 799***************************.***********97 PP
2	Myb_DNA-binding	59.2	8.9e-19	75	117	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eEd+ l++a+k+lG++ W+ Iar+m+ gR+++ +k++w+ C.cajan_21957 75 KESWSEEEDKVLIEAHKELGNK-WAEIARRMP-GRSENTIKNHWN 117 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.807	18	73	IPR017930	Myb domain
SuperFamily	SSF46689	1.95E-31	20	116	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-15	22	71	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-25	24	75	IPR009057	Homeodomain-like
Pfam	PF13921	2.8E-18	26	84	No hit	No description
CDD	cd00167	1.01E-12	26	69	No hit	No description
PROSITE profile	PS51294	20.962	74	124	IPR017930	Myb domain
SMART	SM00717	4.2E-16	74	122	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-21	76	122	IPR009057	Homeodomain-like
CDD	cd00167	8.58E-12	77	120	No hit	No description
Gene3D	G3DSA:3.30.1890.10	4.2E-4	131	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MNNQVQRRSI TVKFQNQISN IIKGQWSADE DRVLVQLVKR FGLKKWSQIA RLLNGRIGKQ 60 CRERWHNHLR PNIRKESWSE EEDKVLIEAH KELGNKWAEI ARRMPGRSEN TIKNHWNATK 120 RRLYARKQRI KRTTSKGATT LLQSYIRQVT EAENNHLNKP INNNLHQRPY RVRYESSEGG 180 FTSEEEEPAW HRHLPVANDD YVPVMLTSEE MATASAVEAG AVDYGVAMEK EMDLMEMIYR 240 KAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-45	18	122	2	106	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_21957

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020215152.1	1e-178	transcription factor MYB118
Swissprot	Q9S7L2	9e-60	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A151TPJ2	0.0	A0A151TPJ2_CAJCA; Transcription factor MYB98
STRING	XP_007140966.1	1e-103	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1570	31	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	5e-62	myb domain protein 98

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]