PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22041
Common NameKK1_022693
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 325aa    MW: 36502.5 Da    PI: 7.8698
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22041genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-32169225158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh hA+rR+Rg+gGrF
  C.cajan_22041 169 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKNRKPYLHESRHLHAMRRARGNGGRF 225
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.7E-37167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.811168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-28170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-24171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-24202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPGKPDTDDW RVERGEQIQF QSSIDSNHQP WWRGVGENAS KSSSADQLNG STVNGITRSE  60
TNEELAGGVD FNMQRRPMVS PPLLGTGRDV TKEYQDIKHS MSSASFTMDQ HLAPNPHMEL  120
VGHSVVLTSP YSDAQYGQIF PTYGQQTMIN PQLYGMHHAR MPLPLEMEEE PVYVNAKQYH  180
GILRRRQSRA KAELEKKVVK NRKPYLHESR HLHAMRRARG NGGRFLNTKK LENNDCIATS  240
DEGNDIGANS SMNTPNTQHF LINNENIGSS SASQSTVQDM HRVQCFNIDN YHNVNGLTAL  300
YHSQANGKKE GDYFGTMRGP NGAFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21169246276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215351.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020215352.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020215353.10.0nuclear transcription factor Y subunit A-1
TrEMBLA0A151TPS30.0A0A151TPS3_CAJCA; Nuclear transcription factor Y subunit A-1
STRINGGLYMA12G36540.61e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-37nuclear factor Y, subunit A1