PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22354
Common NameKK1_023012
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 360aa    MW: 40125.7 Da    PI: 7.0631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22354genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
    C.cajan_22354 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.13.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
    C.cajan_22354  69 GGFSEEEDNIICSLYVSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.813962IPR017930Myb domain
SuperFamilySSF466895.59E-2711109IPR009057Homeodomain-like
SMARTSM007173.8E-131364IPR001005SANT/Myb domain
PfamPF002494.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-251569IPR009057Homeodomain-like
CDDcd001675.83E-101662No hitNo description
PROSITE profilePS5129420.91263117IPR017930Myb domain
SMARTSM007174.7E-1167115IPR001005SANT/Myb domain
PfamPF002496.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2370117IPR009057Homeodomain-like
CDDcd001674.77E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRREPRNRGN YNSIIKQESD VNRRSSTDGD SSSLSLVHEN NSTTQQCWPQ NINMPVLPLP  180
LTLPLPLPYT DHGPCFNDQD SIRKLLIKLG GRFSGDYYHP ALDGLNLELS DGQQSFQDQQ  240
LHVGSSSSSV CTTTTVNISN NEVQFAQSGD QCQYFSAQGS GVNTLLQGHG SNFTPSIEEL  300
VPSSNFPQGL EFLYGEGMID HNKIIESTTN WGETSTSIYH HNSLASNCQG LEEFSYPGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22354
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-60AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222772.10.0transcription factor RAX3
SwissprotQ9M2Y92e-81RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A151T0M80.0A0A151T0M8_CAJCA; Transcription factor RAX3
STRINGGLYMA14G10340.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-78myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]