PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22371
Common NameKK1_023029
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 308aa    MW: 34034.2 Da    PI: 6.6144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22371genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ +v+ +G+g +W + +++ g++R++k+c++rw++yl
    C.cajan_22371 14 RGPWSPEEDATLKSYVETHGTGgNWIALPKKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding45.81.4e-1469126246
                      SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + +qlG++              +W++Ia+ ++ gRt++++k++w++
    C.cajan_22371  69 GGFTEEEDNIICTLYAQLGSRlnygtliklcsclfRWSAIASQLP-GRTDNDVKNHWNT 126
                      569******************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.526966IPR017930Myb domain
SuperFamilySSF466892.32E-2311124IPR009057Homeodomain-like
SMARTSM007178.3E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251569IPR009057Homeodomain-like
CDDcd001675.61E-91662No hitNo description
SMARTSM007171.1E-967130IPR001005SANT/Myb domain
PROSITE profilePS5129413.42667132IPR017930Myb domain
PfamPF002493.4E-1269126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2270132IPR009057Homeodomain-like
CDDcd001678.97E-1071128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYVE THGTGGNWIA LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYAQLGSRL NYGTLIKLCS CLFRWSAIAS QLPGRTDNDV  120
KNHWNTKLKK KIMSGEVSLK ALTNNDPLIP SSPTPSLTQN SVFPSSQNQN FLPPMLSILD  180
ANSGFNNVNE QNISFDQTNG LYGPHVMDVV SEIGASSSIN NNINPMVSLS GEGSSVSDSS  240
SIAMNNNKGS VSQPQHASDE SMEMMDFGFG FPYDLVNGLN CHYERVGEFP PSWYPEWVDF  300
SYANIKPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141327108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-51AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222814.10.0transcription factor RAX2
TrEMBLA0A151T0N50.0A0A151T0N5_CAJCA; Transcription factor RAX3
STRINGGLYMA14G10483.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-69myb domain protein 84