PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22616
Common NameKK1_023279
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 259aa    MW: 30224 Da    PI: 6.2243
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22616genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.59.9e-293712511100
         DUF260  11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                    +C++  +lapyfp++++k+f n+++lFG+ ++++llk l+++er++ams+++y++++rardPv G++++i++lq+q+e ++ael+l+ ++
  C.cajan_22616  37 ECSN-YILAPYFPHDRQKHFLNARRLFGVGKITNLLKPLDPNERDIAMSTIMYQSDMRARDPVGGCYKLIQHLQSQIEYANAELHLVLQH 125
                    5653.49*****************************************************************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.92625126IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2438122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVSTLGSPHP RYCPLWRSLG RHGFVLEKAP QWVKEEECSN YILAPYFPHD RQKHFLNARR  60
LFGVGKITNL LKPLDPNERD IAMSTIMYQS DMRARDPVGG CYKLIQHLQS QIEYANAELH  120
LVLQHLAFFR AQAHQNNDIS NVTSSQPFLQ QMSQEQHQQY QQQQQQFEQQ QQQQQFKQQQ  180
YVNYNPSLQK DINLWAVQNS ISLLPLSLED DINQDPVVDY DYDQKPVLEL MNKIESDATV  240
HPHHGDDEAV LFKVDKAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-132914914129LOB family transfactor Ramosa2.1
5ly0_B2e-132914914129LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22616
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029128889.11e-158LOB domain-containing protein 22-like isoform X2
TrEMBLA0A151T1D10.0A0A151T1D1_CAJCA; LOB domain-containing protein 22
STRINGGLYMA13G42570.14e-60(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.19e-37LOB domain-containing protein 22