PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22935
Common NameKK1_023610
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27463.8 Da    PI: 9.977
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22935genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.2e-26959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+i+n s rqvtfskRr+g++KKA+ELS+LCda++a+i+fs t kl+ey+s
  C.cajan_22935  9 KKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYAS 59
                   68***********************************************86 PP
2K-box46.81.3e-16901671996
          K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       + L+k++e   re+++l GedL+ L+l+eLq+Le+ L+++l+++ + K+e ++e+i +l++k  el een++L++
  C.cajan_22935  90 DSNDILRKKVEDKSRELKQLYGEDLQGLTLQELQKLEELLKRGLTNVSKLKDEKVMEEIFTLKRKGVELMEENQRLKQ 167
                    455679999**99**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.679161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-30281IPR002100Transcription factor, MADS-box
CDDcd002654.85E-36377No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.05585180IPR002487Transcription factor, K-box
PfamPF014864.6E-1493167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTRKRIQIKK IDNISSRQVT FSKRRKGLFK KAQELSTLCD ADIALIVFSA TSKLFEYASS  60
SMQQVIERRD RHSAMHRLDR PSIEMQIETD SNDILRKKVE DKSRELKQLY GEDLQGLTLQ  120
ELQKLEELLK RGLTNVSKLK DEKVMEEIFT LKRKGVELME ENQRLKQVPS IFQVHRQSSE  180
SIISNSSNFP EDGGSDTSLK LGLVYFNYQL INMIVSLERK SSYTLVLHIP IFLLFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20176176MEF2C
5f28_B3e-20176176MEF2C
5f28_C3e-20176176MEF2C
5f28_D3e-20176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993381e-171BT099338.1 Soybean clone JCVI-FLGm-13P11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223001.11e-144MADS-box protein JOINTLESS
RefseqXP_020223003.11e-144MADS-box protein JOINTLESS
RefseqXP_020223004.11e-144MADS-box protein JOINTLESS
SwissprotQ9FUY64e-63JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A151T2B11e-169A0A151T2B1_CAJCA; MADS-box protein JOINTLESS
STRINGGLYMA08G07260.31e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]