PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23083
Common NameKK1_023761
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 217aa    MW: 25570.2 Da    PI: 7.7879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23083genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-17449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+ +G+++W++Ia+++  gR++k+c++rw++ 
    C.cajan_23083  4 RGHWRPAEDDKLRELVEHYGPHNWNAIAEKLR-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding569.2e-1856100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eE+++lv  ++ +G++ W+ Iar ++ gRt++ +k++w+  
    C.cajan_23083  56 RNPFTEEEEDRLVASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHVM 100
                      789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.172154IPR017930Myb domain
SMARTSM007179.3E-15352IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-29497IPR009057Homeodomain-like
PfamPF002495.7E-17449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-26557IPR009057Homeodomain-like
CDDcd001671.17E-13748No hitNo description
SMARTSM007171.9E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129419.14255105IPR017930Myb domain
PfamPF002491.2E-145699IPR001005SANT/Myb domain
CDDcd001678.37E-1258101No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2058103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MCSRGHWRPA EDDKLRELVE HYGPHNWNAI AEKLRGRSGK SCRLRWFNQL DPRINRNPFT  60
EEEEDRLVAS HRIHGNRWAV IARLFPGRTD NAVKNHWHVM MARIRRERSK QRPAPHQTNP  120
YYNTSVNYDT TTPSSHDKFS YTTLLPFQFT DNNFHFQRPS SSSTMLQDRS QSVEFYDFLQ  180
VNTDSNKSEV TDNARRDEEE VNQDGVPFID FLSVEGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3241037106B-MYB
1mse_C4e-3211031103C-Myb DNA-Binding Domain
1msf_C4e-3211031103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23083
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0928931e-111BT092893.1 Soybean clone JCVI-FLGm-12J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215969.11e-163transcription factor MYB52 isoform X2
SwissprotQ6R0C43e-88MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A151TK391e-162A0A151TK39_CAJCA; Transcription factor MYB44
STRINGXP_007152615.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-90myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]