PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_23087

Common Name

KK1_023765

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

ZF-HD

Protein Properties

Length: 149aa MW: 16539.6 Da PI: 9.0591

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_23087	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	84.6	1.1e-26	11	58	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + +l+CaACgCHRnFHR+ + C.cajan_23087 11 SVYRECLRNHAASLGSYATDGCGEFTVD------GGGLQCAACGCHRNFHRKVK 58 68**********************98......458************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.4E-22	12	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-16	13	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.213	13	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.2E-21	13	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.62E-15	65	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-27	68	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.7E-29	76	134	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEGGSGEKWN SVYRECLRNH AASLGSYATD GCGEFTVDGG GLQCAACGCH RNFHRKVKYP 60 AAPESPPAME YGEGSKKRVR SKFSAEQKEK MLAFAEKLGW KLQRKDLDDE IERFCRGIGV 120 SRQVFKVWMH NHKNSNSSSS TGNVSSLTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-23	75	139	16	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_23087

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020215953.1	1e-109	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	8e-40	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A151TK51	1e-108	A0A151TK51_CAJCA; ZF-HD homeobox protein At4g24660 family
STRING	XP_007160565.1	1e-89	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-40	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]