PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23172
Common NameKK1_023852
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 238aa    MW: 26765 Da    PI: 6.5948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23172genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ede l+++  ++G+  +W t +++ g++R++k+c++rw++yl
    C.cajan_23172 14 RGPWSPQEDETLKNYLMKHGTAgNWITLPQKAGLKRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding46.39.4e-1569112246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd+l+  + +  G+++W++Ia+ ++ gRt++++k++w++
    C.cajan_23172  69 GGFTDEEDQLICTLYATIGSRQWSLIAAQLP-GRTDNDVKNHWNT 112
                      569****************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.633962IPR017930Myb domain
SuperFamilySSF466892.05E-2511110IPR009057Homeodomain-like
SMARTSM007177.9E-111364IPR001005SANT/Myb domain
PfamPF002493.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-231569IPR009057Homeodomain-like
CDDcd001673.41E-81662No hitNo description
PROSITE profilePS5129421.97663118IPR017930Myb domain
SMARTSM007171.6E-1267116IPR001005SANT/Myb domain
PfamPF002493.3E-1369112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2370117IPR009057Homeodomain-like
CDDcd001672.18E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPQ EDETLKNYLM KHGTAGNWIT LPQKAGLKRC GKSCRLRWLN  60
YLRPHIKHGG FTDEEDQLIC TLYATIGSRQ WSLIAAQLPG RTDNDVKNHW NTKLKKKFLA  120
ENTNATVCPQ FSTSTPQPQV EDHVFDHKNS SESHVLRFEQ TPIPNPSPLP LGSDVSGLGS  180
SFSAPLPNEV SLLSNSISLV KEENETQWFG YHDNIEGEAF LLDFVYEDLL HNGFVSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23172
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215941.11e-177transcription factor MYB87
SwissprotQ9FKL22e-67MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A151TKG11e-178A0A151TKG1_CAJCA; Transcription factor RAX3
STRINGXP_007160258.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-70myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]