PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23210
Common NameKK1_023890
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 1033aa    MW: 115170 Da    PI: 6.7969
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23210genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22111212199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae++        +++   ++l+ +d++ ++W++++i+r++++r++lt+GW+ F + ++L +gD+v+F   ++++
  C.cajan_23210 111 FCKQLTASDTSTHGGFSVPRRAAEKIfppldysVQPP--AQDLVARDLHDNTWRFRHIFRGQPKRHLLTTGWSLFISRKRLLAGDSVLFV--RDEK 202
                    99*****************************843333..348************************************************..5688 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++l+++++r+
  C.cajan_23210 203 QQLLLGIRRA 212
                    889****997 PP
2Auxin_resp115.45.1e-38237320183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aaha++++s+F+v+YnPras+seFv++++k+ ka++ +++s GmRf+m+feteds +rr +Gt++gvsdld+vrW+nS Wr+L+
  C.cajan_23210 237 AAHAVANHSPFTVFYNPRASPSEFVIPLAKYYKAVYsHHISSGMRFRMMFETEDSGTRRHMGTIIGVSDLDSVRWKNSLWRNLQ 320
                    79********************************99899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-42101240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-40102226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-18110202No hitNo description
PROSITE profilePS5086311.617111213IPR003340B3 DNA binding domain
SMARTSM010192.7E-21111213IPR003340B3 DNA binding domain
PfamPF023627.6E-20111212IPR003340B3 DNA binding domain
PfamPF065071.3E-33237320IPR010525Auxin response factor
PfamPF023094.0E-89181006IPR033389AUX/IAA domain
PROSITE profilePS5174527.7029211005IPR000270PB1 domain
SuperFamilySSF542774.12E-6938999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
ERSINSELWH ACAGPLLSLP SPGTHVVYFP QGHSEQVAAS LKKNVDAQVP NYTNLPSKIP  60
CLLHNVKLHA DQDTDEVYAQ MTLQPVTSFD TDALLRSDIS LRSSKSQPEF FCKQLTASDT  120
STHGGFSVPR RAAEKIFPPL DYSVQPPAQD LVARDLHDNT WRFRHIFRGQ PKRHLLTTGW  180
SLFISRKRLL AGDSVLFVRD EKQQLLLGIR RANRQPSNLS SSVLSSDSMH IGVLAAAAHA  240
VANHSPFTVF YNPRASPSEF VIPLAKYYKA VYSHHISSGM RFRMMFETED SGTRRHMGTI  300
IGVSDLDSVR WKNSLWRNLQ VGWDESIAEE RQSRVSVWEI EPVTAPYFIC PPPLYRSKRP  360
RLPDDEPDFN NGLKRTVPWL GDDTCMKDLQ ALPGLNLIQW TNIQQNPALA SSLQPNYNIL  420
QTSWQLDHIQ KLPSTPSALG MVTQPPQQLG DITQQQRNLT NQTLSQNQVH TQLLNPQSLV  480
QTDNILQQQQ SSIQNHQLLT SVSQNPPQQH QQSTMGQNQR KNSFQPSMPD HFNQQLQMSD  540
NQVRLQLLQK LQRQQQTLLA QQSALQQPAQ IQSQDQWRQI LDVAHNSSVR TPGQVPENLP  600
TLQNSLPEAN TITHRITMPS SQKNIQFSHL SQQPALLFET SGHVGLPPTV KSNPLSASGG  660
SVLTGAGQSI ITDDVPSCST SPSTNNCAST LPPVISSQIH KSTTIGDDMA QSSVTILSPS  720
ALETMSSANK LKDVQPKYEV KPSLNISKSL NQGNVAPETY LNGVVQTDYL DSTSSTTSLF  780
HFQSDTRIHQ NNNQFSYNPQ SMYFRDNSQN AEVQADDRSN VPYFNNLNGQ MELPPNLGTV  840
GLGNDLSNNF SSGGLLGDYE NNRVVQPELS SSMVSQTFDV PDMSFNSIDS TINGSSFLNK  900
DAWALPPPPP PPPQHQFQRR RTYTKVYKRG AVGRSIDIAR YSGYEELKQD LALMFGIEGR  960
LEEQQRIGWK LVYVDHENDV LLVGDDPWKE FVDCVRCIKI LSPQEVQQMS MDGDFGHGGL  1020
PYPAGSSSDG GNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-163434151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23210
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353420.0AC235342.1 Glycine max strain Williams 82 clone GM_WBb0088H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127304.10.0auxin response factor 19 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A151TKI80.0A0A151TKI8_CAJCA; Auxin response factor (Fragment)
STRINGGLYMA08G03141.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19