PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23223
Common NameKK1_023903
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 234aa    MW: 26551.9 Da    PI: 9.229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23223genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32157215159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  C.cajan_23223 157 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 215
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-34142215IPR003657WRKY domain
SuperFamilySSF1182906.15E-29149216IPR003657WRKY domain
PROSITE profilePS5081129.585152217IPR003657WRKY domain
SMARTSM007744.0E-37157216IPR003657WRKY domain
PfamPF031062.0E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSTTSHSIVH HSLFEEQDQI PSQMGFFPFP TNLTFPPLGC HQSSLKAFSS VAPASLAISQ  60
QDSASNLTET LFSTTAQKSR EDLNSTTFGG AQFLSLQRSS VNPWAPGEVT DCFSTKRSGF  120
DDHHLGISAM KMKKMKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY  180
YRCTQDNCRV KKRVERLAED PRMVITTYEG RHAHSPSSDL EDSQTLSQLG NFLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27148214874Probable WRKY transcription factor 4
2lex_A4e-27148214874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23223
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909140.0BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215926.11e-177probable WRKY transcription factor 13
SwissprotQ9SVB71e-60WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A151TKL01e-176A0A151TKL0_CAJCA; Putative WRKY transcription factor 13
STRINGGLYMA08G15210.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.18e-55WRKY DNA-binding protein 13