PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23498
Common NameKK1_024185
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 298aa    MW: 32749.6 Da    PI: 9.377
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23498genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-08241285446
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      W+  Ed  l++a k ++++   +W+++a+ ++ gR+   c  r+  
    C.cajan_23498 241 WSSAEDIALLNALKAFPKEapmRWEKVAAAVP-GRSKAACMRRFAE 285
                      ********************************.********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.122144185IPR017877Myb-like domain
SMARTSM007170.042148201IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-6150188IPR009057Homeodomain-like
PROSITE profilePS500907.457233287IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-7235286IPR009057Homeodomain-like
SMARTSM007175.3E-6237289IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-10237287IPR009057Homeodomain-like
PfamPF002496.6E-7240285IPR001005SANT/Myb domain
CDDcd001671.88E-6241287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFLDEDARP RFVFQSGAAA TTEPPDPTHK PTKPFLFATL SLSSILLTLS LFFLQSEPFQ  60
SLLFWFALSL LIGPFAPPSI TGGHVRVGRG DVVNFPDPEP EPDDDKKPPQ RRSKQRRPEE  120
APAVGPVMVA AEKRGVEKKA AAAATVVEEK EWSEEDVEVL KKQMVKNPVG KPGRWEAIAA  180
AFGGRHGVES VIKKSKELGE KKVDDSESYA LFLKKRKALD KRVVEENGGE DSVEKVVENG  240
WSSAEDIALL NALKAFPKEA PMRWEKVAAA VPGRSKAACM RRFAELKKGF RSAKAAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114PPQRRSKQ
2109116QRRSKQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23498
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215506.10.0transcription factor MAMYB
SwissprotQ9ASQ22e-81MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A151TLB60.0A0A151TLB6_CAJCA; DnaJ isogeny subfamily C member 2
STRINGXP_007159816.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.18e-58MYB_related family protein