PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_23536

Common Name

KK1_024223

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 214aa MW: 24214.8 Da PI: 5.9525

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_23536	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.1	7.1e-55	40	135	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +e drflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyveplk yl+ky+e+egek C.cajan_23536 40 KEMDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDVIWAITTLGFEDYVEPLKSYLQKYKEIEGEK 135 799******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-53	36	162	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-40	43	146	IPR009072	Histone-fold
Pfam	PF00808	1.1E-27	45	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.2E-21	73	91	No hit	No description
PROSITE pattern	PS00685	0	76	92	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.2E-21	92	110	No hit	No description
PRINTS	PR00615	4.2E-21	111	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDPDESHGTL PNGFNTGSPE SPCLKTSTNT TPTTHNNNNK EMDRFLPIAN VGRIMKKVIP 60 PNGKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGEDVIWAIT TLGFEDYVEP 120 LKSYLQKYKE IEGEKLNIPK QLRSEQRLQH HPHNSNQDEN NQTFNGAYAS TNLISQPPYV 180 ASDQKFSSLP FSPNSIQSQL RQQDQIDSVG HWYE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	5e-44	40	130	3	93	NF-YB
4awl_B	6e-44	40	130	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	6e-44	40	130	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_23536

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020215942.1	1e-160	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	7e-67	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A151TLE8	1e-159	A0A151TLE8_CAJCA; Nuclear transcription factor Y subunit B-7
STRING	GLYMA05G32680.1	1e-127	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	7e-68	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]