PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23793
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 372aa    MW: 43150 Da    PI: 6.6456
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23793genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.62e-2815023811100
         DUF260  11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                    +C++  +lapyfp++++k+f n+++lFG+ ++++llk l+++er++ams+++y++++rardPv G++++i++lq+q+e ++ael+l+ ++
  C.cajan_23793 150 ECSN-YILAPYFPHDRQKHFLNARRLFGVGKITNLLKPLDPNERDIAMSTIMYQSDMRARDPVGGCYKLIQHLQSQIEYANAELHLVLQH 238
                    5653.49*****************************************************************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.926138239IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-24151235IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVGFTKFTFN IKLLSCVILS KSYTGVIINL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPPSSANIP TVSLLSSLGS  120
PHPRYCPLWR SLGRHGFVLE KAPQWVKEEE CSNYILAPYF PHDRQKHFLN ARRLFGVGKI  180
TNLLKPLDPN ERDIAMSTIM YQSDMRARDP VGGCYKLIQH LQSQIEYANA ELHLVLQHLA  240
FFRAQAHQNN DISNVTSSQP FLQQMSQEQH QQYQQQQQQF EQQQQQQQFK QQQYVNYNPS  300
LQKDINLWAV QNSISLLPLS LEDDINQDPV VDYDYDQKPV LELMNKIESD ATVHPHHGDD  360
EAVLFKVDKA VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-1314223214104LOB family transfactor Ramosa2.1
5ly0_B4e-1314223214104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029128889.11e-156LOB domain-containing protein 22-like isoform X2
TrEMBLA0A151SFS40.0A0A151SFS4_CAJCA; LOB domain-containing protein 22
STRINGGLYMA13G42570.12e-58(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-35LOB domain-containing protein 22