PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23795
Common NameKK1_024484
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 194aa    MW: 20926.9 Da    PI: 9.8223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23795genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-124792555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  C.cajan_23795 47 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 92
                   99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.87E-144096No hitNo description
SuperFamilySSF474591.31E-1740101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.394291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1744101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-104792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-134897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPLSFHQTLY NINASPQPPN PHTHTFGPSA PPKHKVRARR GQATDPHSIA ERLRRERIAE  60
RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PVVGEMSSEG  120
GKVKGNEASS NDSLAMTEQQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISNATSRTF  180
INAHAPPTSP GPNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23795
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229201.11e-141transcription factor bHLH82
SwissprotQ9ZUG91e-76BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A151SFI31e-141A0A151SFI3_CAJCA; Transcription factor bHLH66
STRINGGLYMA17G08300.26e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-62LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]