PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24082
Common NameKK1_025446
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family E2F/DP
Protein Properties Length: 342aa    MW: 37971.2 Da    PI: 5.959
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24082genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2791173271
        E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  C.cajan_24082  91 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsngvstpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 173
                    689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.9E-1343342IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.0E-4686179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3490173IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2592173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.06E-2193174IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.26E-44178281IPR014889Transcription factor DP, C-terminal
SMARTSM011383.5E-71180340IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-43180295No hitNo description
PfamPF087812.1E-42181296IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGTQPQQTFR EEEEEELPGR GTTISGQSMS TSRSVGSPSS RSEQTMATPA SDNTFLRLNH  60
LDIHGDDAGS QGAVASKKKK RGQRAVGGDK SGRGLRQFSM KVCEKVESKG RTTYNEVADE  120
LVAEFADPSN GVSTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSLS  180
DIEELKTERL GLRNRIEKKA AYLQELEEQY VGLQKLIQRN EQLYSSGNAP NGGVSLPFIL  240
VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERSQND NATDNPTDGG  300
EGSSMSGLYH AQVPTSVSNP PNRTPSSPPL PGILKARIKN EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3984178193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937950.0BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230133.10.0transcription factor-like protein DPB
RefseqXP_020230134.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-162DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A151SD620.0A0A151SD62_CAJCA; Transcription factor Dp-1
STRINGGLYMA01G43800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-154Transcription factor DP