PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24139
Common NameKK1_024813
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 74aa    MW: 8712.72 Da    PI: 9.6033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24139genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07547344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +l+ +a +++ ++   +W  +a+ +g  R+ +++k ++
    C.cajan_24139  5 SWTSRQNKLFEQALALYDKEtpdRWQNVANVVG--RSVEEVKRHY 47
                     7******************9************8..*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.677155IPR017884SANT domain
SMARTSM007178.0E-7253IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-4457IPR009057Homeodomain-like
SuperFamilySSF466898.77E-13459IPR009057Homeodomain-like
CDDcd001671.05E-4551No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MASTSWTSRQ NKLFEQALAL YDKETPDRWQ NVANVVGRSV EEVKRHYEIL KEDVKRIENG  60
QVPFPRYKTN NSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-27172178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311792e-81KT031179.1 Glycine max clone HN_CCL_102 MYB/HD-like transcription factor (Glyma02g06240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129643.12e-49protein RADIALIS-like 1
SwissprotF4JVB82e-28RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A151SEG45e-48A0A151SEG4_CAJCA; Uncharacterized protein
STRINGGLYMA02G06240.15e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-31RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]