PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24490

Common Name

KK1_025706

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 232aa MW: 25316.8 Da PI: 7.8832

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24490	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.6	3.1e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q++ C.cajan_24490 2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAA 97 6*********************************************************************************************** PP DUF260 92 aelall 97 +e++l+ C.cajan_24490 98 VETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.826	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPQSQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLGLDAPT 120 ADEASEGEVT CTDKWRVRDP NPNFRLPGSR SGNAASGAKR KRFEELAKLQ TTTDLNLRLT 180 PSFLQNACRE IRRPGSPSMN SEESVTTTAC LESGIGDHYA ADGDRKALNL FI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24490

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020230381.1	1e-172	LOB domain-containing protein 38
Swissprot	Q9SN23	2e-83	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A151SCB7	1e-171	A0A151SCB7_CAJCA; LOB domain-containing protein 38
STRING	GLYMA11G05280.1	1e-151	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-86	LOB domain-containing protein 38