PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24681

Common Name

KK1_042049

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 136aa MW: 15800.2 Da PI: 10.0878

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24681	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H C.cajan_24681 23 FICEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP
2	zf-C2H2	15.1	6.4e-05	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ C.cajan_24681 99 WKCEKCSKKYAVQSDWKAHSKTC 121 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.2E-7	22	45	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.62E-8	22	45	No hit	No description
SMART	SM00355	0.0052	23	45	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	4.1E-6	23	45	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	23	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	64	94	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.2E-6	87	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.62E-8	94	119	No hit	No description
SMART	SM00355	140	99	119	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
GAKDPDAEVI ELSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKEPK 60 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT 120 CGTREYRCDC GTLFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-23	95	136	3	44	Zinc finger protein JACKDAW
5b3h_F	4e-23	95	136	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24681

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229682.1	4e-95	protein indeterminate-domain 5, chloroplastic
Refseq	XP_020229683.1	4e-95	protein indeterminate-domain 5, chloroplastic
Refseq	XP_020229684.1	4e-95	protein indeterminate-domain 5, chloroplastic
Swissprot	Q8GYC1	5e-94	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A151SE43	7e-97	A0A151SE43_CAJCA; Zinc finger protein MAGPIE (Fragment)
TrEMBL	A0A371EKS2	5e-96	A0A371EKS2_MUCPR; Protein indeterminate-domain 4, chloroplastic (Fragment)
STRING	EOY01198	2e-93	(Theobroma cacao)
STRING	XP_008460216.1	3e-93	(Cucumis melo)
STRING	XP_004140400.1	3e-93	(Cucumis sativus)
STRING	XP_004157851.1	3e-93	(Cucumis sativus)
STRING	XP_007143766.1	2e-93	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	4e-84	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]