PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24724
Common NameKK1_025090
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 531aa    MW: 57858.3 Da    PI: 7.4198
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24724genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-111151555799
                    TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +r++lt+GW++Fv++++L +gD++vF   + +++ l+v+++r+
  C.cajan_24724 115 RRHLLTTGWSNFVNQKRLVAGDSIVFL--RAENGDLCVGIRRA 155
                    789************************..4488999****997 PP
2Auxin_resp113.32.4e-37203285283
     Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    ++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  C.cajan_24724 203 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 285
                    6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-581114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-1583156IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-1286154No hitNo description
SMARTSM010190.003287156IPR003340B3 DNA binding domain
PfamPF023621.1E-8115155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-12115157IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.446116156IPR003340B3 DNA binding domain
PfamPF065076.6E-33203285IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MERGSERCLD SQLWHACAGA MVQMPPLNTK VFYFPQGHAE HARGKVDFGQ TRIPPFIPCR  60
LSAMKYMADP DTDEVGVEGQ EKPPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRRHLLT  120
TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGAEFSSGWN PLFGGGSGFL  180
SGAKGGGDEM VGRVAAESVL EAVTCAVNGR PFEVVYYPRA SSPEFCVKAS VVKAAMQIQW  240
CSGMRFKMPF ETEDSSRISW FMGTISSVQV ADPIRWPDSP WRLLQVVWDE PDLLQNVKCV  300
NPWLVELVSN MPTFNLSAYS PPRKKQRFIQ DPYFQVINQL PMPSFSGNLL NYTNSLCNIE  360
NNSSAGIQGA RHAQFGLSPS DFPFNKLQAD MLLGGFSRLD HAAQPIRPPC GTYKSNPATK  420
ANVDISCLLT VGTPGQNYKE SNETKAPHIL LFGKLIHTEQ KSSNTSSAST AGNSVSEGNS  480
LKTSNASDGI GSALHQSSPI ENNSDGGSPW YKDQHKSDLE TETVNTLCMA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-50930651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229756.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A151SE650.0A0A151SE65_CAJCA; Auxin response factor
STRINGXP_007143708.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-164auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]