PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24785
Common NameKK1_026259
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 183aa    MW: 20430 Da    PI: 7.8762
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24785genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.56.4e-45131121100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrr+C++dCv+apyfp ++p+kf  vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal
  C.cajan_24785  13 PCAACKLLRRRCTRDCVFAPYFPVDEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLAL 108
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  C.cajan_24785 109 AQAE 112
                    9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.75712113IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-4413110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKESGRKQGT MSPCAACKLL RRRCTRDCVF APYFPVDEPQ KFGSVHKVFG ASNVNKMLQE  60
LPEHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD VLQTQLALAQ AEVVHMRMRQ  120
YSTPSSDQQQ QQQPSSVPHE ASNSSSENLY ESSRLLTSNT KSLFGMDMVV DQANNMGQSL  180
WSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-5091147112LOB family transfactor Ramosa2.1
5ly0_B6e-5091147112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0978640.0BT097864.1 Soybean clone JCVI-FLGm-16M12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230877.11e-135LOB domain-containing protein 4
SwissprotQ9SHE92e-67LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A151SAR61e-134A0A151SAR6_CAJCA; LOB domain-containing protein 4
STRINGGLYMA08G17990.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.16e-59LOB domain-containing protein 4