PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24893
Common NameKK1_024991
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 307aa    MW: 33612.1 Da    PI: 8.6136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24893genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12128173454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  C.cajan_24893 128 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKEL 173
                    699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16128190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9128173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-12129178No hitNo description
SuperFamilySSF474592.62E-16129190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSNSSTDESN FDFERPTKLL KTTSSSCNSD SSNITKTLSP KLSPSSSFSS FQSQILSFDN  60
PNSSSASNTQ FYGFDCALNP TQTDLVSVPV PQLGKQRLPT QTPKGSPKTQ NFETKPSHGK  120
RSPAHAQDHI MAERKRREKL SQSFIALAAL VPGLKKMDKA SVLGDAIKYV KELKERLAVL  180
EEQSKKTRAE SVVVLNKPDL SGDDDSSSCD ESIGADHSVS ESLFEVESRV SGKEMLLRIH  240
CQKQKGLLVK LLAEIQSYNL FVVNSSVLPF GDTILDITIV AQMGESFNLT TKELVKNLRL  300
AAFKAMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14119202280Transcription factor MYC2
5gnj_B4e-14119202280Transcription factor MYC2
5gnj_E4e-14119202280Transcription factor MYC2
5gnj_F4e-14119202280Transcription factor MYC2
5gnj_G4e-14119202280Transcription factor MYC2
5gnj_I4e-14119202280Transcription factor MYC2
5gnj_M4e-14119202280Transcription factor MYC2
5gnj_N4e-14119202280Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137ERKRRE
2133138RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24893
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311060.0KT031106.1 Glycine max clone HN_CCL_80 bHLH transcription factor (Glyma05g23530.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229617.10.0transcription factor bHLH18
TrEMBLA0A151SEK80.0A0A151SEK8_CAJCA; Transcription factor bHLH25
STRINGGLYMA17G16720.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-52bHLH family protein