PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24969
Common NameKK1_025641
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 331aa    MW: 37664.9 Da    PI: 7.2147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24969genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12193218126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  C.cajan_24969 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-13259311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.56E-13269312No hitNo description
PfamPF139205.1E-9269311No hitNo description
PROSITE profilePS5008910.365270308IPR001841Zinc finger, RING-type
CDDcd001621.27E-7270311No hitNo description
SMARTSM001841.5E-4270307IPR001841Zinc finger, RING-type
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEDSNQQAKS AENQQSEQVC SFFRKPVNRK NIRKRTIDNE DNEEDSNKET SLLHIQKKTL  60
KPDNKLYFST GSSKASACAE PSEESGKPVF QFESSKNIQV QHDNKATATL ETETEFSKDA  120
RAIRERTLKQ AAESLKETST SSKDEKLYKG INNYKDYKAG FRREQTIASE KAGGSHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLDK EWEEAEKARK  240
MRLAAGEDAD EEGGASLTDE DDEDSLPFAC FICRNAFVDP VVTKCKHYFC EHCALKHHAK  300
NKKCFVCNQP TLGIFNVAHE IRRKMAEDKI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-671732512317RING finger protein 113A
5z58_M6e-671732512317RING finger protein 113A
6ff4_t6e-671732512317RING finger protein 113A
6ff7_t6e-671732512317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230309.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-161C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A151SCN70.0A0A151SCN7_CAJCA; Zinc finger CCCH domain-containing protein 1
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-158C3H family protein