PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_25007
Common NameKK1_027178
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 434aa    MW: 49961.9 Da    PI: 7.1603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_25007genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-18162208148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
    C.cajan_25007 162 KGQWTPDEDRLLIQLVEQFGVRKWSHIAQALP-GRIGKQCRERWHNHL 208
                      799*****************************.*************97 PP
2Myb_DNA-binding58.31.7e-18216256345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
    C.cajan_25007 216 IWTEEEDKILIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 256
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.919157212IPR017930Myb domain
SuperFamilySSF466891.87E-32159255IPR009057Homeodomain-like
SMARTSM007171.5E-17161210IPR001005SANT/Myb domain
PfamPF002491.5E-17162208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-28163214IPR009057Homeodomain-like
CDDcd001675.06E-16165208No hitNo description
SMARTSM007173.1E-17213261IPR001005SANT/Myb domain
PROSITE profilePS5129421.541213263IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-22215261IPR009057Homeodomain-like
CDDcd001675.11E-14217259No hitNo description
PfamPF002494.3E-17217256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEDQLPFGAP SSQGFLQDFH QFHVNGSSSS NPVFGVQTHP NFDPFDHNVT CEYAPPDFDV  60
YESKPFAESD GRGHAHLMDN FQHVGYSLNL PRTNQLDVMV ANQTYLPFNA LETKPLNFVV  120
PDEVSCISPP NYYKRIGFNK NIRESPRTRR TFKARKKSNI VKGQWTPDED RLLIQLVEQF  180
GVRKWSHIAQ ALPGRIGKQC RERWHNHLRP DIKKDIWTEE EDKILIEAHA EIGNKWAEIA  240
KRLPGRTENS IKNHWNATKR RQYSKRKCRS KYPRGTLLQE YIKSLNLDQN PPIDYRKKSA  300
KNTKAKTNNN GKAAAAQSQS QCPDQFCPNG QLVAKYDFNE VPDFCLDDNL FEEGCSINSL  360
LDDMHSASTM DEKDLDEKMQ CAPTMEGKQS HQRGIMQFAH VVNVDEHHEV KTELDLVEMM  420
SHVNESHYST DSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-441602622104C-Myb DNA-Binding Domain
1msf_C3e-441602622104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146156RTRRTFKARKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_25007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0283310.0EU028331.1 Glycine max clone BAC gmw1-89M01 genomic sequence.
GenBankEU0283320.0EU028332.1 Glycine max clone BAC gmw2-77P21 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231790.10.0transcription factor MYB98
SwissprotQ9S7L22e-97MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A151S8780.0A0A151S878_CAJCA; Transcription factor MYB98
STRINGGLYMA05G02300.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-96myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]