PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_25359
Common NameKK1_026600
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 272aa    MW: 31158.2 Da    PI: 5.8882
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_25359genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092172512155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yp+ +++  LA+++gL+++qV +WF N+R ++
  C.cajan_25359 217 KWPYPTDADKVALAEWTGLEQKQVNNWFINQRKRH 251
                    569*****************************885 PP
2ELK285.1e-10171192122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    E K  Llr Ysgy+ +Lk+EFs
  C.cajan_25359 171 EMKSNLLRRYSGYITNLKHEFS 192
                    67999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-113579IPR005540KNOX1
PfamPF037907.2E-153973IPR005540KNOX1
SMARTSM012562.4E-1980131IPR005541KNOX2
PfamPF037916.1E-2186130IPR005541KNOX2
PfamPF037893.9E-9171192IPR005539ELK domain
SMARTSM011881.2E-5171192IPR005539ELK domain
PROSITE profilePS512139.865171191IPR005539ELK domain
PROSITE profilePS5007112.276191254IPR001356Homeobox domain
SuperFamilySSF466899.84E-19192256IPR009057Homeodomain-like
SMARTSM003897.7E-11193258IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-26196255IPR009057Homeodomain-like
CDDcd000866.70E-13206254No hitNo description
PfamPF059201.9E-15211250IPR008422Homeobox KN domain
PROSITE patternPS000270229252IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MENNPYDDFY CSASYSDQST MAPPPPFEKE EDVSKPLCAK VASHPLFPHL LHAYIDCQKV  60
GAPQDVAHLL EGIKGDHVIS DGFLDDDPEL DHFMGAFCDL LVKFKSDLAR VFDEATMFLS  120
HMETQLHSIC NDPAATNNTP QPDEVTGSSG KDLSREEKEA NECKRVNEVQ EMKSNLLRRY  180
SGYITNLKHE FSKKKKKEKL PKEAKQILLA WWNLHFKWPY PTDADKVALA EWTGLEQKQV  240
NNWFINQRKR HWKPTEGIHA AIFDGLYGPL HE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_25359
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-51AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231179.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS62e-76KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A151S9V20.0A0A151S9V2_CAJCA; Homeobox protein knotted-1-like 6
STRINGGLYMA04G35850.21e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-70KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]