PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_25511
Common NameKK1_025945
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 493aa    MW: 54896.4 Da    PI: 6.5068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_25511genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-172976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +l+d+v+++G g+W++  r  g++R++k+c++rw ++l
    C.cajan_25511 29 KGPWTTAEDAILIDYVTKHGEGNWNALQRNTGLNRCGKSCRLRWANHL 76
                     79******************************************9986 PP
2Myb_DNA-binding52.11.5e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++l+v+++ q+G++ W++ a+ ++ gRt++++k++w++
    C.cajan_25511  82 KGAFSPEEEKLIVELHSQFGNK-WARMAALLP-GRTDNEIKNYWNT 125
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.342476IPR017930Myb domain
SuperFamilySSF466894.12E-3026123IPR009057Homeodomain-like
SMARTSM007176.6E-142878IPR001005SANT/Myb domain
PfamPF002491.8E-142976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-233083IPR009057Homeodomain-like
CDDcd001671.41E-103176No hitNo description
PROSITE profilePS5129424.71777131IPR017930Myb domain
SMARTSM007179.1E-1681129IPR001005SANT/Myb domain
PfamPF002494.7E-1582125IPR001005SANT/Myb domain
CDDcd001671.65E-1184125No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2584130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MFGGNGGGGS DNGGGGEGGG NAEEMTLKKG PWTTAEDAIL IDYVTKHGEG NWNALQRNTG  60
LNRCGKSCRL RWANHLRPNL KKGAFSPEEE KLIVELHSQF GNKWARMAAL LPGRTDNEIK  120
NYWNTRIKRR QRQGLPLYSD DHDHHRSTTP TTTPMLTPTD LNPNNTSTNY EFFNQHHQYQ  180
HQQHPLSPTT HHHSPLTSPL QHRPFNSSSP HTFLDRSPLP LSSFTFQRPA PMLCTPLRFK  240
RYRASPNSYN FINPSSSSLP DDSHVATQFP HLDGFKFPTV QGFSQFFQPS LFDTDQGVSS  300
SSSVFQPKLE LPSNQFYKPP QEQELKLDLD FNDPSFQSSS GLLGDLLLEA QSLASGHNSK  360
KRGYLSLNEG NDVFDACQSF EDFPPDSLFW SSTSTSNSVP KLKDEAPDLS KFTNEDLSSL  420
LTVIPSSNMQ GHEWHNNNSA PEGSNVHSSG SGMTDDNFGL DIKPIASLFP LTNTTNHNEN  480
QGCYSWDNLP GLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30271305107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_25511
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230619.20.0transcription factor MYB97 isoform X1
TrEMBLA0A151SBM10.0A0A151SBM1_CAJCA; Transcription factor GAMYB
STRINGXP_007146493.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-64myb domain protein 33