PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_25600
Common NameKK1_026361
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 175aa    MW: 18570 Da    PI: 4.8551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_25600genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05150172223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+k+F++ s L++H +  H
  C.cajan_25600 150 SCKSCSKTFTSESGLQQHSKAkH 172
                    7*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.113149175IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLGKPEKKAE DLKVPESKKP EAKVAASAKQ VKVVDPKKDD EEDSDDDSDE DGDFDSSDEE  60
MGDADGDSDE ESDSDEDDDE ETPKKVDLGK KRPNESASKT PVSKKAKNAT PEKTDGKKGG  120
HQATPHPVKK GGKTPNSGAK DKSPKSGGLS CKSCSKTFTS ESGLQQHSKA KHGGQ
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_25600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230977.11e-113histone deacetylase HDT1
SwissprotQ8LJS23e-40HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A151SAK11e-115A0A151SAK1_CAJCA; Histone deacetylase HDT1
STRINGGLYMA12G30600.11e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-09histone deacetylase 2C