PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_25861

Common Name

KK1_027445

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WOX

Protein Properties

Length: 265aa MW: 29746.1 Da PI: 5.1849

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_25861	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.6	1.9e-22	82	142	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++Fe+ + +ps+e+++e+A++l +++e++V++WFqNrRa+ k+ C.cajan_25861 82 RQRWTPTAMQLQILERMFEQgTGTPSKEKIKEIAAELsqhgQISETNVYNWFQNRRARSKR 142 89***************99************************************97 PP
2	Wus_type_Homeobox	103	2e-33	81	144	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++i+aeL+++G+i+++NV++WFQNr+aR+++kq C.cajan_25861 81 SRQRWTPTAMQLQILERMFEQGTGTPSKEKIKEIAAELSQHGQISETNVYNWFQNRRARSKRKQ 144 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-18	76	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.71	78	143	IPR001356	Homeobox domain
SMART	SM00389	3.1E-16	80	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-20	80	145	IPR009057	Homeodomain-like
CDD	cd00086	2.28E-15	82	144	No hit	No description
Pfam	PF00046	3.6E-20	82	142	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MVNVMEWPNQ RWQPNKLTYV KVMTDEQLET LRKQIAVYAT ICENLIEMHK TISARQDLAG 60 IRMGNVYCDP LLGSSGHKIA SRQRWTPTAM QLQILERMFE QGTGTPSKEK IKEIAAELSQ 120 HGQISETNVY NWFQNRRARS KRKQQSVGPS VNGESEVETE VDSKDKKTKP DEFQSPSSVS 180 AGPADNLGFQ NTNNLQYMNP ESNNPDSVFT SDGSLTSTRS FDVPVFDGLL SNSSSDYLTG 240 KIEAPENYEL YQSAGDYNMV GGHSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_25861

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231945.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	1e-77	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A151S7H0	0.0	A0A151S7H0_CAJCA; WUSCHEL-related homeobox 13
STRING	GLYMA18G52491.1	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-80	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]