PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_25928

Common Name

KK1_026517

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 168aa MW: 18419.9 Da PI: 6.9916

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_25928	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9.3e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa+vhk+FGasnv k+l++lpe++r+da+s++vyeA+ar+rdPvyG+vg i++lqqq+++l+++lal C.cajan_25928 13 PCAACKLLRRRCANDCVFAPYFPADEPHKFAIVHKVFGASNVNKMLQELPEQQRSDAVSAMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLAL 108 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e C.cajan_25928 109 AQAE 112 9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.144	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKEGGRKQGA TSPCAACKLL RRRCANDCVF APYFPADEPH KFAIVHKVFG ASNVNKMLQE 60 LPEQQRSDAV SAMVYEANAR VRDPVYGCVG AISSLQQQVD ELQTQLALAQ AEVVHMRMCH 120 ASTSSDQHKP ASNTSSENLS PSSRLAKSLF DMDMVVDQPN MGESLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_25928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231156.1	1e-124	LOB domain-containing protein 4
Refseq	XP_020231157.1	1e-124	LOB domain-containing protein 4
Swissprot	Q9SHE9	2e-68	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A151SA26	1e-123	A0A151SA26_CAJCA; LOB domain-containing protein 4
STRING	XP_007133379.1	1e-95	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-69	LOB domain-containing protein 4