PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26531
Common NameKK1_027875
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 314aa    MW: 35401 Da    PI: 5.2379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26531genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
    C.cajan_26531 14 KGTWTPEEDSKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding55.91e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T eE+e +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
    C.cajan_26531  67 RGNYTREEEECIIRMHKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.442961IPR017930Myb domain
SuperFamilySSF466895.75E-2911108IPR009057Homeodomain-like
SMARTSM007172.3E-101363IPR001005SANT/Myb domain
PfamPF002497.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-221568IPR009057Homeodomain-like
CDDcd001673.03E-91661No hitNo description
PROSITE profilePS5129426.48762116IPR017930Myb domain
SMARTSM007173.0E-1766114IPR001005SANT/Myb domain
PfamPF002497.9E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2569115IPR009057Homeodomain-like
CDDcd001677.98E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVRTPSRDKS GLRKGTWTPE EDSKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPNLKRGNY TREEEECIIR MHKKLGNRWS AIAAELPGRT DNEIKNHWHT TLKKRSQQNT  120
LTNEEARASK SKDKESKLGR DSVPKNGVNV SVTLPCTSQI SDISDSLSPL SSSSEFSSLS  180
SDHSTAASMK NLMFEDDLGF LDSFNESFWT ELNLDDISYN APSETVSGDT NNGSFQSTDS  240
SQIHDFSAFS PNQSTSESLV IDNDFGGFLD AYADNFWTHP YVADMSHVPS ELLVPSVSVA  300
ESDYFPPIYD DLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26531
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150397e-41AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232376.10.0transcription factor MYB30
TrEMBLA0A151S6500.0A0A151S650_CAJCA; Myb-related protein Myb4
STRINGGLYMA12G11390.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-55myb domain protein 15