PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_26814

Common Name

KK1_029270

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 257aa MW: 28661.2 Da PI: 6.772

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_26814	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l++++k++G+ +W++ ++ g+ R++k+c++rw++yl C.cajan_26814 14 RGAWSKEEDERLINYIKLHGTTNWRSLPQSAGLLRCGKSCRLRWLNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	47.4	4.3e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE +++++ +lG++ W+ Ia+t++ gRt++++k++w++ C.cajan_26814 67 RGNFTVEEANHIIHLHGLLGNK-WSQIAATLP-GRTDNEIKNYWNTC 111 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.827	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.95E-28	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.99E-12	16	61	No hit	No description
PROSITE profile	PS51294	23.812	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-11	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-12	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.44E-8	69	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGRTPCCDRE HTNRGAWSKE EDERLINYIK LHGTTNWRSL PQSAGLLRCG KSCRLRWLNY 60 LRPNIKRGNF TVEEANHIIH LHGLLGNKWS QIAATLPGRT DNEIKNYWNT CLKRHLISLG 120 IDPVTHNPLE KITTTPEANS QASGSGVTTT SDIHYFDVFL NSKVEISTDY AAGEEDSSSN 180 NVVTTSIEEV HPPLINLDLS LAPPSQPQEQ QEQVLSQRMC LRCGLGLQSN PSCSCQAMVS 240 VVTAPVSNNV EYQFFGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-27	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_26814

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020233543.1	0.0	myb-related protein 308
Swissprot	P81393	3e-76	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A151S2E1	0.0	A0A151S2E1_CAJCA; Myb-related protein 308 family
STRING	XP_007159923.1	6e-95	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	5e-71	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]