PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_26846

Common Name

KK1_029303

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Trihelix

Protein Properties

Length: 356aa MW: 40260.5 Da PI: 6.682

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_26846	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5e-20	34	126	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Lie ++ +e+ + + + p+W+ vs +++rg++r+++qC+++w nl ++++kik++e++ ++es+s + + +++ C.cajan_26846 34 RWTRQETLVLIESKKMVENGEQICRfrsasgfvQSDPKWDMVSTLCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESSIREESESFWIMRNDV 126 8************998877743233456788********************************************99999888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-4	31	101	IPR009057	Homeodomain-like
Pfam	PF13837	4.5E-11	33	122	No hit	No description
PROSITE profile	PS50090	6.528	34	99	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAEKICEGAA ESPTTPVGRQ APEGQRVKAT RHPRWTRQET LVLIESKKMV ENGEQICRFR 60 SASGFVQSDP KWDMVSTLCQ QRGVKRGAVQ CRKRWGNLLT DFRKIKKWES SIREESESFW 120 IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLVK MVPKVENGVE GVALPPEQYN 180 KENEDEEVEE EEEDEAIVDS EKMSWSTEEE HMETNVTGNM INGFLKTHGS KDKGTPGSLK 240 KIMPMLTFPT PDKQQQPSCQ GNYDPGPPPP GYQREPMFQE GYKRKRLSSD SSEDSTDFNN 300 SIAKLLRRNS DILKAHLGAQ NINHQLARDQ QKQQTDILVA ALGKLTDALT KIADKL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAEKICEGAA ESPTTPVGRQ APEGQRVKAT RHPRWTRQET LVLIESKKMV ENGEQICRFR  60
SASGFVQSDP KWDMVSTLCQ QRGVKRGAVQ CRKRWGNLLT DFRKIKKWES SIREESESFW  120
IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLVK MVPKVENGVE GVALPPEQYN  180
KENEDEEVEE EEEDEAIVDS EKMSWSTEEE HMETNVTGNM INGFLKTHGS KDKGTPGSLK  240
KIMPMLTFPT PDKQQQPSCQ GNYDPGPPPP GYQREPMFQE GYKRKRLSSD SSEDSTDFNN  300
SIAKLLRRNS DILKAHLGAQ NINHQLARDQ QKQQTDILVA ALGKLTDALT KIADKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_26846

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-135	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020233534.1	0.0	trihelix transcription factor ASR3 isoform X2
TrEMBL	A0A151S2F7	0.0	A0A151S2F7_CAJCA; Uncharacterized protein
STRING	GLYMA05G38580.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-50	Trihelix family protein