PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26961
Common NameKK1_029744
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 239aa    MW: 27422.4 Da    PI: 9.1048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26961genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.52e-3151137185
                    EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                    f+k+ltpsdv+k++rlv+pk++ae+h   + ++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++
  C.cajan_26961  51 FEKALTPSDVGKLNRLVIPKQHAEKHfplE-SSSKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLNAGDVVLFHRH 137
                    99*************************973.3357789***********************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-4043153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3148146IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-2850138No hitNo description
PROSITE profilePS5086314.1751150IPR003340B3 DNA binding domain
SMARTSM010191.6E-2351150IPR003340B3 DNA binding domain
PfamPF023624.9E-2851137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSINQYSCWN QQQQQQQQAA TWVADSNSPR FNLNKEEVVA AEQEEEKEAM FEKALTPSDV  60
GKLNRLVIPK QHAEKHFPLE SSSKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY  120
VKDKRLNAGD VVLFHRHRIH PHRFFISSTP RQTPPSYPHS HSLGGGSQAQ AQAQGQKETT  180
AASSGRVLRL FGVNMECQPQ PQPHHDSQNS TPQCSYSFSP YSSSNPHPRH HMLHQQQPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-4746136395B3 domain-containing transcription factor NGA1
5os9_B3e-4746136395B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26961
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-66AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233899.11e-180B3 domain-containing protein At2g36080
SwissprotQ8GYJ28e-60Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A151S1A81e-178A0A151S1A8_CAJCA; B3 domain-containing protein At2g36080 family
STRINGGLYMA19G38340.23e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.17e-45B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]