PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_27136

Common Name

KK1_027536

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WRKY

Protein Properties

Length: 594aa MW: 64825.5 Da PI: 6.6487

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_27136	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.2e-30	240	298	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+++d +++++tYeg+Hnh+ C.cajan_27136 240 NDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCSQDMSILITTYEGNHNHP 298 8*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-31	224	300	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	232	300	IPR003657	WRKY domain
PROSITE profile	PS50811	28.908	234	300	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	239	299	IPR003657	WRKY domain
Pfam	PF03106	4.5E-26	240	298	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MEFGSEISGH EVKDEKRSES SIGDEEDRRE QEIVMQEPPL TTIERSTVEA GPNASPTKKE 60 EVDELETAKA EMGEVIQENQ RLKMSLNRIL NDYRTLQMQF HSIVEQETKD SSDKVKNNDH 120 QETIIEESDL VSLSLGRLPR SNEKAKASKP LKDEEDKEGL SLGLDCKFET SKSGSSTEHM 180 PNASPDNSVE APKEEAGGES PPKKGHKTNR DAGEDEVSQQ NPTKKARVCV RARCDTPTLN 240 DGCQWRKYGQ KISKGNPCPR AYYRCTVAPS CPVRKQVQRC SQDMSILITT YEGNHNHPLP 300 LSATAMASTT SAAASMLLSG SSTSHSGSRP STSADLHGMN FFLSDGSKSK QYYLSHPALS 360 SSPSHPTITL DLTSNPPSSS PPFVKFTSNS NYNSQRYPST SLNFGSNESN ATSWTNNGFL 420 SYTTQQQQPY NNNRNNVNFL SNINLGRQQQ QQPQPMENIL NSYMQRNNNN NNIPIPPPQH 480 SLPDTIAAAT KVITADPNFQ SALAAALTTI IGSGSTNQGA VENNLTQKMK WGELFPSSSA 540 LPSSSKVSGC ASSFLNKSPA STQAASLMFL QPPLPLSSPR SASGSPGDNR DKKN

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MEFGSEISGH EVKDEKRSES SIGDEEDRRE QEIVMQEPPL TTIERSTVEA GPNASPTKKE  60
EVDELETAKA EMGEVIQENQ RLKMSLNRIL NDYRTLQMQF HSIVEQETKD SSDKVKNNDH  120
QETIIEESDL VSLSLGRLPR SNEKAKASKP LKDEEDKEGL SLGLDCKFET SKSGSSTEHM  180
PNASPDNSVE APKEEAGGES PPKKGHKTNR DAGEDEVSQQ NPTKKARVCV RARCDTPTLN  240
DGCQWRKYGQ KISKGNPCPR AYYRCTVAPS CPVRKQVQRC SQDMSILITT YEGNHNHPLP  300
LSATAMASTT SAAASMLLSG SSTSHSGSRP STSADLHGMN FFLSDGSKSK QYYLSHPALS  360
SSPSHPTITL DLTSNPPSSS PPFVKFTSNS NYNSQRYPST SLNFGSNESN ATSWTNNGFL  420
SYTTQQQQPY NNNRNNVNFL SNINLGRQQQ QQPQPMENIL NSYMQRNNNN NNIPIPPPQH  480
SLPDTIAAAT KVITADPNFQ SALAAALTTI IGSGSTNQGA VENNLTQKMK WGELFPSSSA  540
LPSSSKVSGC ASSFLNKSPA STQAASLMFL QPPLPLSSPR SASGSPGDNR DKKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	226	300	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_27136

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020232011.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-122	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A151S7G6	0.0	A0A151S7G6_CAJCA; Putative WRKY transcription factor 72
STRING	GLYMA06G20300.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-65	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]