PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27662
Common NameKK1_027709
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 449aa    MW: 51104.8 Da    PI: 8.7925
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27662genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.9e-09419442226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     t lCr+++r G C +Gd+CkF H+
  C.cajan_27662 419 QTQLCRHYSR-GRCYFGDTCKFLHD 442
                    699*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.306.2E-894140IPR003034SAP domain
SuperFamilySSF689064.21E-795140No hitNo description
PROSITE profilePS5080010.246105139IPR003034SAP domain
SMARTSM005131.6E-4105139IPR003034SAP domain
PfamPF020375.5E-10106139IPR003034SAP domain
Gene3DG3DSA:4.10.1000.109.3E-9414444IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4417443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6417442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211418444IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6419442IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MATKDSALEL HEITTDSEGS DADPEWGDSD YEDPDFDVHE ETQINFSNFS LKHNPKTARL  60
TLSKFGSCSV VEDKGLGEEV LEATSSVRDG ENFDKVQKLI EAGLVEKLKV DECKLYLRKN  120
GLRLTGNKET LIQRIKEHLE ILHGGEKKYP PSSFVLNCKG DACTGDVVLF EQNVYEMFNI  180
ASRSASGPPC GKRIVAGRIV KESYGAAKQQ HTFTFFRQQN ASTYPVLIQI EVLWSKGEKP  240
LPPLHPLLIK GRNLYRLKTM RQKWEDEVKR QKILMEKHSR GSFARADREA RIQEKEKRKK  300
VRENRVSKKD SARNQCQETN VPTNLEKSEF PSRNSGLSAH IGKETLANKP LVIPGQCVDS  360
KTMAMGMGSD QLETRSFPVH HIHNQQPWNP TTGWNHQRVP LANANYSHPM MPNRESHKQT  420
QLCRHYSRGR CYFGDTCKFL HDLRDTGNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_27662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-40AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232205.10.0zinc finger CCCH domain-containing protein 62
TrEMBLA0A151S6R70.0A0A151S6R7_CAJCA; Zinc finger CCCH domain-containing protein 62
STRINGGLYMA16G01296.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224