PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27944
Common NameKK1_029617
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 398aa    MW: 43288.6 Da    PI: 5.8295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27944genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-184489147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+q+G ++W+ Iar ++ gR++k+c++rw + 
    C.cajan_27944 44 KGPWSPEEDEVLSRLVAQFGARNWSMIARGVP-GRSGKSCRLRWCNQ 89
                     79******************************.***********985 PP
2Myb_DNA-binding591.1e-1896140147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
    C.cajan_27944  96 RKPFTEEEDNIIVSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 140
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7773990IPR017930Myb domain
SuperFamilySSF466892.34E-3141137IPR009057Homeodomain-like
SMARTSM007172.5E-154392IPR001005SANT/Myb domain
PfamPF002491.4E-164489IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-264597IPR009057Homeodomain-like
CDDcd001676.97E-154688No hitNo description
PROSITE profilePS5129426.26591145IPR017930Myb domain
SMARTSM007171.4E-1795143IPR001005SANT/Myb domain
PfamPF002493.2E-1696140IPR001005SANT/Myb domain
CDDcd001672.40E-1398141No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2498144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTEKDRSAEP TLRNGVDAGE DFQLIGGDAE VAVVGDGSVA GRVKGPWSPE EDEVLSRLVA  60
QFGARNWSMI ARGVPGRSGK SCRLRWCNQL DPCVKRKPFT EEEDNIIVSA HAIHGNKWAA  120
IARLLPGRTD NAIKNHWNST LKRRCMELGR YVPAHPDVIE DGSYEKAKAS SEETMSIGDI  180
NSLNPAEIRN VLMDNENKTP RENDAKVEEH PTLYRPVARI SAFSVYNPPG RPTTGSCSKI  240
FPRQSPLIVS PKPDVGSCKL FDGIDCEPMV PLQCGHGCCA ADSRESHSHG SLLGPEFVDY  300
LESPSFSSHA LISIATDLNN IAWIKSGLDN CSAGVTDNTA NLTASQGVAT ASQTNFLRQD  360
LRNGYGQFEE GPSNFLGAMQ EVLSTKMARQ HLAMPAEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40431446107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_27944
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346283e-31KM034628.1 Jatropha curcas clone JcMYB007 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233746.10.0transcription factor MYB1
SwissprotQ425756e-88MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A151S1V50.0A0A151S1V5_CAJCA; Transcription factor MYB44
STRINGGLYMA14G06870.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-98myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]