PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28075
Common NameKK1_029857
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 283aa    MW: 31794.3 Da    PI: 8.7121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28075genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13106153355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +A++Y+k++q
  C.cajan_28075 106 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 153
                    5799************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10107153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-17107167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17107165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-11108157No hitNo description
SMARTSM003534.1E-14109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
METSPTGNER PAKQLRNNNW NHNKSQQISD TQFASCSNLL SFVNSNYTSE LGVVKPKVEM  60
VCPKINNSTL ADMLISQGTL GNQNYVFKAS QEAKNIETRP KLSQPQDHII AERKRREKLS  120
QRFIALSALV PGLKKMDKAS VLGEAIKYLK QMQEKVSALE EEQNRKRTVE SVVIVKKSLL  180
SSEAEDSSSS DTGGTVDEAL PEIEARFCER NVLIRIHCEK NKGVIDKTIS EIEKQHLKVI  240
NSSAMTFGSF ILDITIIAQM DTEFCMTVKD LVRSLRSAFS YFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-15104163564Transcription factor MYC2
5gnj_B8e-15104163564Transcription factor MYC2
5gnj_E8e-15104163564Transcription factor MYC2
5gnj_F8e-15104163564Transcription factor MYC2
5gnj_G8e-15104163564Transcription factor MYC2
5gnj_I8e-15104163564Transcription factor MYC2
5gnj_M8e-15104163564Transcription factor MYC2
5gnj_N8e-15104163564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116ERKRRE
2112117RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28075
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234046.10.0transcription factor bHLH25
RefseqXP_020234047.10.0transcription factor bHLH25
RefseqXP_029130338.10.0transcription factor bHLH25
SwissprotQ9T0722e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A151S1160.0A0A151S116_CAJCA; Transcription factor bHLH25
STRINGGLYMA13G32650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-55bHLH family protein