PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28113
Common NameKK1_030646
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 208aa    MW: 24151.1 Da    PI: 7.6122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28113genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
    C.cajan_28113 16 KGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding54.42.9e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+v++++++G++ W++Ia++++ gRt++++k++w++
    C.cajan_28113  69 RGNITHEEQLLIVELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23966IPR009057Homeodomain-like
PROSITE profilePS5129417.2821163IPR017930Myb domain
SuperFamilySSF466891.27E-2913110IPR009057Homeodomain-like
SMARTSM007178.6E-131565IPR001005SANT/Myb domain
PfamPF002491.0E-151663IPR001005SANT/Myb domain
CDDcd001678.96E-101863No hitNo description
PROSITE profilePS5129424.97764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2467118IPR009057Homeodomain-like
SMARTSM007174.1E-1568116IPR001005SANT/Myb domain
PfamPF002499.2E-1669112IPR001005SANT/Myb domain
CDDcd001676.95E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDKKPCNLSQ DPEVRKGPWT MEEDLILINY IANHGEGVWN SLAKASGLKR TGKSCRLRWL  60
NYLRPDVRRG NITHEEQLLI VELHAKWGNR WSKIAKHLPG RTDNEIKNFW RTRIQKHIKQ  120
AENLQQQVNI SEINDHHQAS TSTSKVSTMA HPIETYSSSS YQPVTLEPYF PTQFPIITDQ  180
SSCCTNDDNN NNYWSMEDIW SMQLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234717.11e-156myb-related protein 340
SwissprotP813912e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A151RYS71e-155A0A151RYS7_CAJCA; Myb-related protein 305 family
STRINGGLYMA05G08690.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-84myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]