PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28183
Common NameKK1_030794
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 311aa    MW: 34857.7 Da    PI: 9.8042
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28183genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-08243446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     WT+eE ++l d+++++  + +  Ia +++  Rt +++k+r+++
    C.cajan_28183  2 WTKEETDQLFDLCERFDLR-FVVIADRFPSSRTVEELKDRYYS 43
                     *******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-6147IPR009057Homeodomain-like
SMARTSM007172.2E-6247IPR001005SANT/Myb domain
PfamPF162826.7E-19248IPR032563DAMP1, SANT/Myb-like domain
CDDcd116584.93E-20244No hitNo description
Gene3DG3DSA:1.10.10.604.5E-6246IPR009057Homeodomain-like
PfamPF054995.6E-6186248IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MWTKEETDQL FDLCERFDLR FVVIADRFPS SRTVEELKDR YYSVSRAILI ARAPSSGDVA  60
AHPLVKEPYN VSQEMERKRA LSMVLSQTRQ QERRDEEVLV EAKRIAESRI PPKVAEESQL  120
VASNPGAEAT ERAIPGETVS PPNAQLPSMV TPTALPDNAS TLASLRMLRV YLRTYALEQM  180
VQAANASAGL RTIKRVEQTL QDLGVNLKPR VPTKAVCAEH LELRREILTW LNLQKQVQYK  240
EAEGSSFRDG SYGETPGTPK LLHRGGDQDR TFVPDSINFG AERVGKKDQK RKAPGAPSAH  300
KRPRKLKASD L
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948860.0BT094886.1 Soybean clone JCVI-FLGm-25A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234810.10.0SWR1-complex protein 4 isoform X1
SwissprotQ8VZL61e-141SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A151RYH80.0A0A151RYH8_CAJCA; SWR1-complex protein 4
STRINGXP_007163204.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-143MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]