PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28353
Common NameKK1_026866
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 100aa    MW: 11523 Da    PI: 8.8627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28353genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.4e-09651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT    +++ +a + + ++   +W   ar +g g+t +++k ++ +
    C.cajan_28353  6 AWTSKQNKKFENALAIYDKDtpdRWQNLARAVG-GKTVEEVKRHYEM 51
                     8********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.22262IPR017884SANT domain
SMARTSM007173.8E-7355IPR001005SANT/Myb domain
CDDcd001671.58E-6653No hitNo description
Gene3DG3DSA:1.10.10.605.0E-5659IPR009057Homeodomain-like
PfamPF002497.2E-6652IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-12760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSAWTSK QNKKFENALA IYDKDTPDRW QNLARAVGGK TVEEVKRHYE MLVDDLKQIE  60
EGHVPLPNYR NVSATVGPNI KGYTYMDQEQ RFNLLRIAHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-32297692RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28353
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-83AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231448.15e-65protein RADIALIS-like 3
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A151S9279e-70A0A151S927_CAJCA; DnaJ isogeny subfamily C member 2
STRINGGLYMA14G08101.18e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-35RAD-like 6