PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28603
Common NameKK1_028544
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 244aa    MW: 27670.6 Da    PI: 8.5794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28603genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.25.6e-48141401128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF+Ptdeelv +yLk k+ + +l++ ++i+e+++ k++Pwd+p ++  +e+e yfFs++++ky++g+r nr+t+sgyWkatg+dk++ s+ 
  C.cajan_28603  14 LPPGFRFQPTDEELVFQYLKCKIFSCQLPA-SIIPEINVSKYDPWDFPGNC--DEQERYFFSSKETKYRNGNRMNRTTNSGYWKATGSDKKISSSi 106
                    79****************************.89***************544..7899************************************998 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++   g++ktLvfy+g++p+g++tdWvmheyrl
  C.cajan_28603 107 sNNGIAGVRKTLVFYEGKSPNGSRTDWVMHEYRL 140
                    88888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5510169IPR003441NAC domain
PROSITE profilePS5100553.53514169IPR003441NAC domain
PfamPF023659.5E-2615140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MERLNFIKNG MSRLPPGFRF QPTDEELVFQ YLKCKIFSCQ LPASIIPEIN VSKYDPWDFP  60
GNCDEQERYF FSSKETKYRN GNRMNRTTNS GYWKATGSDK KISSSISNNG IAGVRKTLVF  120
YEGKSPNGSR TDWVMHEYRL VSLESDASNS SQNYANEIGD WVLCRMSMKK RSKESGDNST  180
APRKNNTMRN SVQVDQPRFF DFLSVQNSAP APIHSSTSSS SSSSNNFVEV SSPNHEETSG  240
YADF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-471417417170NO APICAL MERISTEM PROTEIN
1ut4_B5e-471417417170NO APICAL MERISTEM PROTEIN
1ut7_A5e-471417417170NO APICAL MERISTEM PROTEIN
1ut7_B5e-471417417170NO APICAL MERISTEM PROTEIN
3swm_A6e-471417420173NAC domain-containing protein 19
3swm_B6e-471417420173NAC domain-containing protein 19
3swm_C6e-471417420173NAC domain-containing protein 19
3swm_D6e-471417420173NAC domain-containing protein 19
3swp_A6e-471417420173NAC domain-containing protein 19
3swp_B6e-471417420173NAC domain-containing protein 19
3swp_C6e-471417420173NAC domain-containing protein 19
3swp_D6e-471417420173NAC domain-containing protein 19
4dul_A5e-471417417170NAC domain-containing protein 19
4dul_B5e-471417417170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28603
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0926820.0BT092682.1 Soybean clone JCVI-FLGm-16A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232922.10.0NAC domain-containing protein 83
SwissprotQ9FY933e-69NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A151S4E20.0A0A151S4E2_CAJCA; NAC domain-containing protein 29
STRINGGLYMA06G17480.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-65NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]