PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28636
Common NameKK1_028577
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 243aa    MW: 28094.5 Da    PI: 10.3287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28636genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-152722298
                   H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3 22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                   f++++g+    s t+ l+ ++g +W+v+l  +k  g+++++kGW eFvk + L  g  ++F++dg s f  +v +++
  C.cajan_28636  2 FVSKYGK--YLSSTMFLKLPNGAEWRVNL--EKINGSVWFQKGWDEFVKHHSLAHGHLLIFRYDGASHF--HVLICD 72
                   6667763..47789***************..*********************************99999..999998 PP
2B3452e-14137233497
                    E-..-HHHHTT-E.....E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
             B3   4 vltpsdvlksgrl.....vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                    +++ s+  ++++l     +lpk  ++++ ++  +  + ++     rsW+vkl++  ++++ ++t+ W  F+++n+LkegD ++F+l ++ ++  ++
  C.cajan_28636 137 IMKASHLIRQCMLmhvmqYLPKGPLKSFIKS--G-EQYVMLLVGDRSWRVKLSHYHNKSSSYFTAQWPAFARDNDLKEGDACLFQLLNSsDDLVMK 229
                    5666666666666444456777777666322..2.2355555678*******99777777889**********************98765777777 PP

                    EEEE CS
             B3  94 vkvf 97 
                    v++ 
  C.cajan_28636 230 VSIS 233
                    7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.521174IPR003340B3 DNA binding domain
PfamPF023624.0E-12272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-19274IPR015300DNA-binding pseudobarrel domain
CDDcd100176.03E-14272No hitNo description
SuperFamilySSF1019362.55E-18274IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0018274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16130234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-15132232IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-18133234No hitNo description
PfamPF023624.2E-12134233IPR003340B3 DNA binding domain
SMARTSM010196.9E-8134236IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828179236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFVSKYGKYL SSTMFLKLPN GAEWRVNLEK INGSVWFQKG WDEFVKHHSL AHGHLLIFRY  60
DGASHFHVLI CDMSGTEIEY PINKANHKRA RIKSEEIQHN KIRRTNGYNK KGKRKIEGSS  120
ISKYGVLEAV NTSFTVIMKA SHLIRQCMLM HVMQYLPKGP LKSFIKSGEQ YVMLLVGDRS  180
WRVKLSHYHN KSSSYFTAQW PAFARDNDLK EGDACLFQLL NSSDDLVMKV SISRYSSLKR  240
PIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28636
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247196.18e-99B3 domain-containing transcription factor VRN1-like
TrEMBLA0A151S4J00.0A0A151S4J0_CAJCA; B3 domain-containing protein At1g49475 family
STRINGGLYMA08G44640.13e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.17e-23B3 family protein