PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28926
Common NameKK1_029645
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 244aa    MW: 27398 Da    PI: 10.0863
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28926genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.56e-35251152101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++ ++lisw+e+g+sf+v  + ef++++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++gk+ ll++i
  C.cajan_28926  25 FLTKTYQLVDDPAADDLISWNEDGTSFIVRRPAEFTRDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDYFRRGKRGLLRDI 111
                    9*****************************************************************99.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  C.cajan_28926 112 QRQK 115
                    **87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-3815108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-3422113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAPLPAEQTG ELAPSESQRS IPTPFLTKTY QLVDDPAADD LISWNEDGTS FIVRRPAEFT  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDYF RRGKRGLLRD IQRQKILPVP  120
AAATVTTANA VTVAVAAPAV RTVSPTTSSD EQVLSSNSSP IDGSGNNNNT VHRTTSCTTA  180
AELLEENERL RKKRGSEKVK PNNCIDRITR ICMIEVNQKA SRRCHEDSMS KKKTLKVTKP  240
PYQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-242511420120Heat shock factor protein 1
5d5u_B2e-241211416129Heat shock factor protein 1
5d5v_B2e-241211416129Heat shock factor protein 1
5d5v_D2e-241211416129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963051e-160JN896305.1 Glycine max heat shock transcription factor HSFB2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029130305.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D36e-67HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A151S1P00.0A0A151S1P0_CAJCA; Heat stress transcription factor B-2b
STRINGXP_007158472.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-59HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]