PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29028
Common NameKK1_027004
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 142aa    MW: 15813.8 Da    PI: 9.4565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29028genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-183282356
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   y GVr ++ +g+++AeIrd + ng   r++lg+f +ae Aa a+++a+ +++g+
  C.cajan_29028 32 YIGVRKRP-WGKFAAEIRDTTRNG--SRVWLGTFESAEAAALAYDQAAFSMRGH 82
                   89******.**********54465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-353195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-303190IPR001471AP2/ERF domain
PROSITE profilePS5103222.2213189IPR001471AP2/ERF domain
PfamPF008474.1E-133182IPR001471AP2/ERF domain
CDDcd000182.85E-183290No hitNo description
SuperFamilySSF541716.08E-223291IPR016177DNA-binding domain
PRINTSPR003673.7E-93243IPR001471AP2/ERF domain
PRINTSPR003673.7E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVDFSTPPTQ GNHNEPNQLV VKSEVQSKQR SYIGVRKRPW GKFAAEIRDT TRNGSRVWLG  60
TFESAEAAAL AYDQAAFSMR GHNAVLNFPV ERVKEKLSSK GKKCKGKETS TSSVMVLEDL  120
GVDYLEQLLT ISEHSSSPSY FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-292790164ATERF1
3gcc_A9e-292790164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29028
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922001e-102BT092200.1 Soybean clone JCVI-FLGm-10G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231531.17e-79ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y91e-39ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A151S8P61e-102A0A151S8P6_CAJCA; Ethylene-responsive transcription factor 1B
STRINGGLYMA13G18350.13e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-27ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]