PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29039
Common NameKK1_028408
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 149aa    MW: 16511.1 Da    PI: 9.4756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29039genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.8e-0538771054
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   + R ++i +++  L++l+ +      +K + +++L++A++YI  L
  C.cajan_29039 38 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMDYIGFL 77
                   789999************999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-52682No hitNo description
Gene3DG3DSA:4.10.280.107.6E-102795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9662877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-122992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDVRKMMEHK RSPCSVDQSS YTSIASKRQK ADLSISSKER KEKIGERIVA LQQLVSPYGK  60
TDTSSVLKEA MDYIGFLHKQ VKLLSAPYLE SSPAVKMQGM EPCSLRSRGL CLVPVSITMG  120
VAESNGADIW APIKTTTSPK FENDVSQFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310980.0KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232801.11e-107transcription factor bHLH153 isoform X1
SwissprotQ7XJU22e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A151S4T11e-106A0A151S4T1_CAJCA; Transcription factor bHLH113 family
STRINGGLYMA02G15520.11e-101(Glycine max)
STRINGGLYMA07G32980.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.57e-61bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]