PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_29278

Common Name

KK1_033142

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 224aa MW: 25189.3 Da PI: 9.8073

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_29278	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.9e-14	76	120	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky C.cajan_29278 76 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 120 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	5.478	1	22	IPR017884	SANT domain
PROSITE profile	PS51294	21.348	69	125	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-17	71	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.9E-18	72	124	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.1E-12	73	120	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-13	73	123	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-13	76	120	IPR001005	SANT/Myb domain
CDD	cd00167	5.05E-12	76	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MIPGKSVVDV IRQYKELEVD VCNIEAGLIP VPGYSTATSP FTLDWVNTPS YDGFKVSGKR 60 SSSVRPHEHE RKKGVPWTEE EHKLFLLGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY 120 FIRQLSGGKD KRRASIHDIT TVNLTETTTT SSEDTNRSTS PHALSVATTL SPAHERVFMT 180 PYGANSFEVK MQGQNLHKSA LYESSYLGPQ TQNMVFQMQQ SSQH

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_29278

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-75	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020236806.1	1e-148	transcription factor DIVARICATA
Swissprot	Q8S9H7	3e-92	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A151RS35	1e-167	A0A151RS35_CAJCA; Myb-like protein J
STRING	GLYMA14G37050.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	3e-61	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]