PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29328
Common NameKK1_028226
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARR-B
Protein Properties Length: 603aa    MW: 66436.8 Da    PI: 6.4604
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29328genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.4e-28166219155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  C.cajan_29328 166 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 219
                    79*******************.********************************8 PP
2Response_reg57.67.1e-2099326109
                    EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    v+++++++ al+ll+e++  +D+il D+ mp+mdG++ll++   e  +lp+i++++ ++ + + + ++ Ga d+l Kp+ +eel++
  C.cajan_29328   9 VTTCTEATVALNLLRERKgcFDVILSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRN 93 
                    88999************99***********************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011033.438199IPR001789Signal transduction response regulator, receiver domain
SMARTSM004486.2E-9195IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363926.5E-1341562IPR017053Response regulator B-type, plant
SuperFamilySSF521727.12E-258105IPR011006CheY-like superfamily
CDDcd001563.48E-20999No hitNo description
PfamPF000722.8E-16994IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.4E-309114No hitNo description
Gene3DG3DSA:1.10.10.606.0E-30163224IPR009057Homeodomain-like
SuperFamilySSF466891.42E-19163223IPR009057Homeodomain-like
PROSITE profilePS5129410.504163222IPR017930Myb domain
TIGRFAMsTIGR015572.7E-24166219IPR006447Myb domain, plants
PfamPF002492.3E-7168217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
LLLCFYLPVT TCTEATVALN LLRERKGCFD VILSDVHMPD MDGYKLLEHV GLEMDLPVIM  60
MSGDSTTSAV MKGIRHGACD YLIKPVREEE LRNIWQHVAR KILNENKEHD HSGSMEDNDR  120
NKRGNDDTEY TSAVDASEIV KAPKKRSNLK EEDVELESDD PTTSKKPRVV WSVELHQQFV  180
SAVNQLGLDK AVPKRILELM NVPGLTRENV ASHLQKFRLY LKRLSGVAQQ QNGMLNAVPG  240
TIESKLGATG RFDIQALAAA GHVPPETLAA LHAELLGCPA TNIMPTVDQT ALLQASMQGP  300
KHSHSEHAVA YGQPLVKCPS NINKNFPPSG LTVNDTSSGY GAWPSSNNTI GSVRPNTSLE  360
RVGIQNNNML MDMLEHQQRQ QHQQKQQRQL QQQSLIHDQS CSINVQPSCL VVPSQSSDTF  420
KAVNSPASVN QDCSFGRNAA IDYSLFSQKS NYSLIASQFP GGDTKAQGVL YGYTTPSTCS  480
TGSSNGNIQQ LQNSTFSFGA ARPLPSLLPM SDRQDPYGFK SDDSLDQVCL RNLGFVGKGT  540
CIPSRFVENE IESSVTDFSQ MKVNVDSSGN TLKEEPNFIN FPKVSHPIIE RYPSRDRSSV  600
FTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-23162225164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232669.10.0two-component response regulator ORR21
RefseqXP_020232670.10.0two-component response regulator ORR21
SwissprotQ8H7S71e-136ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A151S5980.0A0A151S598_CAJCA; Two-component response regulator ARR2 (Fragment)
STRINGGLYMA02G09451.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-101response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]