PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29371
Common NameKK1_028006
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 272aa    MW: 31687.7 Da    PI: 5.6158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29371genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
    C.cajan_29371 14 RGPWTIEEDHKLMNFILHNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding56.18.8e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++
    C.cajan_29371  67 RGGFTEMEEDQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.142961IPR017930Myb domain
SuperFamilySSF466895.87E-2911108IPR009057Homeodomain-like
SMARTSM007179.4E-71363IPR001005SANT/Myb domain
PfamPF002496.2E-121461IPR001005SANT/Myb domain
CDDcd001679.22E-51661No hitNo description
PROSITE profilePS5129425.12562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007179.7E-1766114IPR001005SANT/Myb domain
PfamPF002494.8E-1667110IPR001005SANT/Myb domain
CDDcd001672.01E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVRQPCCDKI GLKRGPWTIE EDHKLMNFIL HNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEEDQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVTHKPIE QKEHNEDTNK TNSQQPYISG GSEENVEMKS LDKEMMTKIE GKREENNVMT  180
WDDTAELLNN FEMIFSQLDL GSWMSQEITN TSTNSLCSSS VTLDDTSHLS VDESSYIQEN  240
SLQQWVDSMD SILSWDGFNP LDQDIFFLEN RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
1gv2_A1e-26121162105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232508.10.0myb-related protein 315
RefseqXP_029130119.10.0myb-related protein 315
SwissprotP813942e-79MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A151S5U60.0A0A151S5U6_CAJCA; Myb-related protein 315 family
STRINGGLYMA16G06900.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.17e-89myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]